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JobID: EXAMPLE_plasmaTypes

***  human-mouse-bovine plasma AbsIDQ  ***

  Metabolites  |  Samples  |  Quality Check  |  PCA  |  Kendall  |  Hypothesis test  |  Logs  |  Input data  |  Download results  

QUALITY CHECK

ms_data; phenotypes; phenotypes_for_QC; ms_data_and_phenotypes

log informationplots/files

Concentration data:

243 samples and 162 metabolites extracted extracted data;
uploaded file

Phenotype data:

Found 243 matched lines with 2 phenotypes specified
Found plasma.type as non-data quality phenotypes

phenotype data;
matched data;
uploaded file

Outliers:

OPTION:drop outliers : ' n '

Replicates:

Found REPLICATES as a phenotype for data quality checks cv plot

Noisy metabolites:

OPTION:drop metabolites with cv > 0.25 : ' y ' cv above 0.25

Batches:

Added Plate.bar.code as a phenotypes for data quality checks batch boxplots
batch p-values
ref/batch boxplots




KEGG Data is provided by the Kanehisa Laboratories for academic use. Any commercial use of KEGG data requires a license agreement from Pathway Solutions Inc.
The Helmholtz Zentrum München imprint applies.

This page is maintained by Gabi Kastenmüller and Werner Römisch-Margl.
Last modification: 28 December 2009

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